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This book constitutes the refereed proceedings of the 39th International Conference on Current Trends in Theory and Practice of Computer Science, SOFSEM 2013, held in pindler v Mlýn, Czech Republic, in January 2013. The 37 revised full papers presented in this volume were carefully reviewed and selected from 98 submissions. The book also contains 10 invited talks, 5 of which are in full-paper length. The contributions are organized in topical sections named: foundations of computer science; software and Web engineering; data, information, and knowledge engineering; and social computing and human factors.